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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74111354_74112114_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74111354 - 74112114
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
LPDEVSGLEQIENTISFEKL
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.2
37.3
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
32.5
-2
3.3
43.8
43.7
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008266
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008577
74110567 - 74115483
4917