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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74112271_74112488_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74112271 - 74112488
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTCACATCATCT
Flanking Amino Acid:
TQEMPFSMTKQDSKPVQMMI
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
44.3
-0.3
2.1
62.12
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008266
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008577
74110567 - 74115483
4917