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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74112956_74113715_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74112956 - 74113715
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTGTTTACAG
Flanking Amino Acid:
YLEKTYPVLPEYLNCAKKFY
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.2
37.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85.2
0.79
0.8
79.2
32.9
Minor 5ss
37
-1.5
3
50
46.3
Minor BPS
46.2
-0.4
2.1
55.63
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008266
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008577
74110567 - 74115483
4917