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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74113845_74114511_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74113845 - 74114511
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTCATCCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CCTTGTTTACAT
Flanking Amino Acid:
TGMGGTTDSQCGPSEHIHDS
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
70.1
0.45
0.9
66.1
35.8
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
46.5
-0.1
2.1
63.96
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008266
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008577
74110567 - 74115483
4917