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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74114563_74115298_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74114563 - 74115298
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATTTCTCCCACT
Flanking Amino Acid:
RGNTESQMEKALHFDNITGM
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
47.6
-0.1
2.2
75.34
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008266
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008577
74110567 - 74115483
4917