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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74138203_74138934_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74138203 - 74138934
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ATTTTTCTATTT
Flanking Amino Acid:
FGEITYPFFQQYLDSTKKFY
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
85
0.79
0.8
76.7
37.5
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
50.4
0.09
1.8
74.15
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008560
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008922
74136052 - 74140455
4404