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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74153691_74155475_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74153691 - 74155475
Intron Length:
1785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACCTG
5'SS Class:
major
3'SS Sequence:
TTCTTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
TVQRDFKLNQNESKPVQMMY
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
57.1
47.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.3
0.57
0.9
74
34.5
Minor 5ss
39.8
-1.1
3.4
55.9
48.3
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
SERPINB11
Ensembl Gene ID:
ENSAPLG00000027357
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034250
74151069 - 74163489
12421