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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74155619_74156026_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74155619 - 74156026
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
AAATTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTCCAAAATT
Flanking Amino Acid:
INAWVENKTQGKIKELFASG
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
70.9
0.47
0.9
67.8
39
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
65.8
0.58
1.9
88.85
36.2

Associated Gene:

Gene:
SERPINB11
Ensembl Gene ID:
ENSAPLG00000027357
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034250
74151069 - 74163489
12421