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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74156145_74156838_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74156145 - 74156838
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGTTTTAAAG
Flanking Amino Acid:
FLQEDFELKQEYLMCSKKLY
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81
0.7
1
82.2
33.3
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
62.1
0.24
1.6
67.62
40.4

Associated Gene:

Gene:
SERPINB11
Ensembl Gene ID:
ENSAPLG00000027357
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034250
74151069 - 74163489
12421