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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74156971_74157335_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
74156971 - 74157335
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
GAAATATTCCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TGTGTTTGAAAT
Flanking Amino Acid:
QERRSSLSSQCNTDGNLNHE
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
57.8
0.18
1
47.8
44.5
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
51.3
0.12
1.6
70.27
40.6

Associated Gene:

Gene:
SERPINB11
Ensembl Gene ID:
ENSAPLG00000027357
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034250
74151069 - 74163489
12421