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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74168706_74169759_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74168706 - 74169759
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTCCTTTATG
Flanking Amino Acid:
IEDETTGLEQLEKALTPETL
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.1
0.84
0.8
84.7
35.8
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
68.5
0.44
1.7
72.36
40.3

Associated Gene:

Gene:
SERPINB5
Ensembl Gene ID:
ENSAPLG00000022949
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047280
74167263 - 74182585
15323