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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74169928_74171397_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74169928 - 74171397
Intron Length:
1470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTGTGTTTTACA
Flanking Amino Acid:
IKECPFKINKTETKPVQMMN
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.6
31.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
81.8
0.71
0.9
75.6
38.3
Minor 5ss
47.6
-0.2
2.4
62.3
42.5
Minor BPS
48.9
-0
2.1
62.29
44.3

Associated Gene:

Gene:
SERPINB5
Ensembl Gene ID:
ENSAPLG00000022949
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047280
74167263 - 74182585
15323