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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74173715_74176287_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74173715 - 74176287
Intron Length:
2573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTCATTAACA
Flanking Amino Acid:
KGDTADQMKQVLHLQDVKDV
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.3
0.57
1
70.4
39.1
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
78.2
0.88
1.5
85.92
32.4

Associated Gene:

Gene:
SERPINB5
Ensembl Gene ID:
ENSAPLG00000022949
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047280
74167263 - 74182585
15323