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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74176463_74182078_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
74176463 - 74182078
Intron Length:
5616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
CTGACTCTAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
47.2
-0.1
2
64.76
45.8

Associated Gene:

Gene:
SERPINB5
Ensembl Gene ID:
ENSAPLG00000022949
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047280
74167263 - 74182585
15323