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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74209966_74211144_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74209966 - 74211144
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCC
5'SS Class:
major
3'SS Sequence:
GTTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTACTTTAATT
Flanking Amino Acid:
MAGNIGNLQKAIDLASKAA
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
64.9
37.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.4
0.73
0.9
76
38
Minor 5ss
30.6
-2.2
3.5
42.1
44.9
Minor BPS
74.9
0.86
1.2
84.21
37.1

Associated Gene:

Gene:
VPS4B
Ensembl Gene ID:
ENSAPLG00000006557
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006878
74209704 - 74227906
18203