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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74212815_74214095_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74212815 - 74214095
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTCAATA
Flanking Amino Acid:
VKESGPADGKGNESDGEGES
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80.5
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72
0.5
1
70.8
39
Minor 5ss
56.3
0.21
2.4
67
44.2
Minor BPS
54.2
0.13
1.5
64.54
36

Associated Gene:

Gene:
VPS4B
Ensembl Gene ID:
ENSAPLG00000006557
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006878
74209704 - 74227906
18203