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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74217092_74217346_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74217092 - 74217346
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGATT
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTGATAAAT
Flanking Amino Acid:
LPIKFPHLFTGKRTPWRGIL
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.3
82.5
37
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
33.6
-1.9
3.3
48.8
47
Minor BPS
50.9
0.11
2.3
81.82
39.4

Associated Gene:

Gene:
VPS4B
Ensembl Gene ID:
ENSAPLG00000006557
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006878
74209704 - 74227906
18203