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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74218980_74219148_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74218980 - 74219148
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATCTTCTAAAT
Flanking Amino Acid:
IKTEFLVQMQGVGVDNEGIL
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
67.4
0.39
0.9
61.6
34
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
51.3
0.12
1.7
72.5
37.8

Associated Gene:

Gene:
VPS4B
Ensembl Gene ID:
ENSAPLG00000006557
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006878
74209704 - 74227906
18203