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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74220951_74223335_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74220951 - 74223335
Intron Length:
2385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GGGTTTTTATTT
Flanking Amino Acid:
IVQSATHFKRVKGPSVSNPN
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
51.9
0.14
1.6
64.38
40.9

Associated Gene:

Gene:
VPS4B
Ensembl Gene ID:
ENSAPLG00000006557
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006878
74209704 - 74227906
18203