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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74223474_74225162_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74223474 - 74225162
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAATA
Flanking Amino Acid:
DKLLEPQVSMNDMLRSLAST
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.4
0.82
0.9
84.2
30.9
Minor 5ss
40.4
-1.1
3.2
56.3
42.5
Minor BPS
69.9
0.62
1.3
76.75
33.9

Associated Gene:

Gene:
VPS4B
Ensembl Gene ID:
ENSAPLG00000006557
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006878
74209704 - 74227906
18203