About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74225274_74227729_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
74225274 - 74227729
Intron Length:
2456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTGGA
5'SS Class:
major
3'SS Sequence:
TTGTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTTAAAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
67.1
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.6
0.78
0.8
80
32.1
Minor 5ss
40.6
-1.1
3.1
52.7
44.8
Minor BPS
70
0.71
1.3
80.49
34.7

Associated Gene:

Gene:
VPS4B
Ensembl Gene ID:
ENSAPLG00000006557
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006878
74209704 - 74227906
18203