About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74236542_74241969_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
74236542 - 74241969

Intron Length:
5428

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GTG|GTGAGTGAG

5'SS Class:
strong_major

3'SS Sequence:
AAATAATTTTTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AAATAAT

U12 Branch Point Sequence:
TTACAAATAATT

Flanking Amino Acid:
PLKLPGAHVVVTGGSSGIGK

Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82.7
0.77
0.9
70.2
35.9

Major BPS
71.2
0.53
1
70.3
31.9

Major PPT
64.8
0.33
1
60.2
44.8

Minor 5ss
26.7
-2.7
3
27.9
37.8

Minor BPS
46.9
-0.1
2
70.27
39.8

Associated Gene:

Gene:
KDSR

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

74236434 - 74250110
13677

74236434 - 74255790
19357