About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74243224_74246992_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
74243224 - 74246992

Intron Length:
3769

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAAGGTCA

5'SS Class:
strong_major

3'SS Sequence:
TTTCCCTTTTTAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CTTAAAT

U12 Branch Point Sequence:
TTTTCTTTCACT

Flanking Amino Acid:
IEKYSVNDKQVVLCISVDVS

Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
90
0.94
0.8
78.4
31.8

Major BPS
70
0.5
1.1
76.9
32.8

Major PPT
86.3
0.82
0.6
85.1
22.3

Minor 5ss
37
-1.5
3.2
47.9
47.8

Minor BPS
78.7
0.98
1.6
95.57
31.2

Associated Gene:

Gene:
KDSR

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

74236434 - 74250110
13677

74236434 - 74255790
19357