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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74248622_74249026_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74248622 - 74249026
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATGTTTGTAAGT
Flanking Amino Acid:
RGLAEALQMETLVLLLFLPC
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
74.2
0.55
1
65.8
45.3
Minor 5ss
36.9
-1.5
3.2
48.2
47.9
Minor BPS
47.7
-0
2.2
68.84
42.9

Associated Gene:

Gene:
KDSR
Ensembl Gene ID:
ENSAPLG00000006943
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033483
74236434 - 74250110
13677