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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74250170_74252920_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74250170 - 74252920
Intron Length:
2751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAT
5'SS Class:
major
3'SS Sequence:
TTTTCTACTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAA
U12 Branch Point Sequence:
TGTTTTTCTACT
Flanking Amino Acid:
PGFAEESKTKPLETKLISET
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
71.2
40.6
Major BPS
67.8
0.44
1.1
69.6
37.5
Major PPT
75.4
0.57
1
76.3
31.3
Minor 5ss
38.9
-1.2
3.3
55.8
48.4
Minor BPS
54
0.21
1.9
76.45
40.1

Associated Gene:

Gene:
KDSR
Ensembl Gene ID:
ENSAPLG00000006943
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007232
74236434 - 74255790
19357