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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74253005_74254845_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74253005 - 74254845
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCCTTCCATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TTGCCCTTAATT
Flanking Amino Acid:
VARVIVKDAIQGNFNSSVGS
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
77.7
0.62
0.8
69.8
35.7
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
81.6
1.07
1.1
89.52
35

Associated Gene:

Gene:
KDSR
Ensembl Gene ID:
ENSAPLG00000006943
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007232
74236434 - 74255790
19357