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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74254948_74255286_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74254948 - 74255286
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TCTAAGTGAATT
Flanking Amino Acid:
VTSITEGLQQVVCMGIFRII
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
84.4
0.77
0.8
76.2
37.8
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
45
-0.3
2.3
66.49
44.2

Associated Gene:

Gene:
KDSR
Ensembl Gene ID:
ENSAPLG00000006943
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007232
74236434 - 74255790
19357