Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74376438_74387746_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

74376438 - 74387746

Intron Length:

11309

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGTGAG

5'SS Class:

strong_major

3'SS Sequence:

CTGCTCCTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

GTGATTTTGACA

Flanking Amino Acid:

MKCSKVCTTRGILKFVEITV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

72.5

39.1

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

74.7

0.56

0.8

68.2

32.1

Minor 5ss

-2.2

3.3

39.7

46.3

Minor BPS

57.4

0.23

1.3

62.83

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019497

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037848

74372384 - 74388453

16070