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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74401459_74403412_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74401459 - 74403412
Intron Length:
1954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGAGAA
5'SS Class:
major
3'SS Sequence:
TCTCTCGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTGTTTTCAGTT
Flanking Amino Acid:
IKQHKAIITEDGKVNGVTDS
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
72.5
32.2
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
82.9
0.74
0.8
80.3
31.7
Minor 5ss
26.1
-2.7
3
30
43
Minor BPS
50.7
0.1
1.7
71.17
40.8

Associated Gene:

Gene:
PHLPP1
Ensembl Gene ID:
ENSAPLG00000003386
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028723
74395657 - 74462482
66826
ENSAPLT00000017683
74400331 - 74462482
62152
ENSAPLT00000003480
74400331 - 74459950
59620