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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74403642_74405867_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74403642 - 74405867
Intron Length:
2226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTAAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTGTTTAAAT
Flanking Amino Acid:
YMINTFIVMQRKLGTAGQKL
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.3
0.55
1
63.8
45.9
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
69.5
0.69
1.8
88.96
35.8

Associated Gene:

Gene:
PHLPP1
Ensembl Gene ID:
ENSAPLG00000003386
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003480
74400331 - 74459950
59620
ENSAPLT00000028723
74395657 - 74462482
66826
ENSAPLT00000017683
74400331 - 74462482
62152