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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74406063_74407023_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74406063 - 74407023
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTGCCTTTACCA
Flanking Amino Acid:
GYTEASGVKNKLCVAALSAN
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
71.9
38
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
76.3
0.59
0.9
70.1
40.1
Minor 5ss
36.3
-1.6
3.2
50.3
39.7
Minor BPS
63
0.4
1.6
72.37
40

Associated Gene:

Gene:
PHLPP1
Ensembl Gene ID:
ENSAPLG00000003386
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017683
74400331 - 74462482
62152
ENSAPLT00000003480
74400331 - 74459950
59620
ENSAPLT00000028723
74395657 - 74462482
66826