About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74425195_74428763_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74425195 - 74428763
Intron Length:
3569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
GHNRIRELPARLFYNSSLRK
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
78.2
37.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.8
0.87
0.6
88.2
21.6
Minor 5ss
35.2
-1.7
3.2
51.1
45.2
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
PHLPP1
Ensembl Gene ID:
ENSAPLG00000003386
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028723
74395657 - 74462482
66826
ENSAPLT00000017683
74400331 - 74462482
62152
ENSAPLT00000003480
74400331 - 74459950
59620