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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74431436_74434010_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
74431436 - 74434010
Intron Length:
2575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TAAATTCAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAAATTCAATT
Flanking Amino Acid:
RMPHIKHVDLRRLEAAETDF
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
58.2
0.18
1
57.3
42.9
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
50.8
0.1
1.7
71.06
39.8

Associated Gene:

Gene:
PHLPP1
Ensembl Gene ID:
ENSAPLG00000003386
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028723
74395657 - 74462482
66826
ENSAPLT00000017683
74400331 - 74462482
62152
ENSAPLT00000003480
74400331 - 74459950
59620