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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74434242_74434799_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74434242 - 74434799
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTGTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCGT
U12 Branch Point Sequence:
CTGCCTGTAATA
Flanking Amino Acid:
SVPAAVGEMHNLQTFLLDGN
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
89.9
21.9
Major BPS
34.6
-0.9
4.2
73.6
41.8
Major PPT
62.3
0.28
1
57.7
37.3
Minor 5ss
29.8
-2.3
3.8
44.2
37
Minor BPS
48.7
-0.1
2
59.79
41.1

Associated Gene:

Gene:
PHLPP1
Ensembl Gene ID:
ENSAPLG00000003386
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028723
74395657 - 74462482
66826
ENSAPLT00000017683
74400331 - 74462482
62152
ENSAPLT00000003480
74400331 - 74459950
59620