Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74434937_74442400_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

74434937 - 74442400

Intron Length:

7464

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTTAGCTGT

5'SS Class:

major

3'SS Sequence:

TAGATTCACTAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTTTCTTATTT

Flanking Amino Acid:

GMDRLMLQKSLKSLNLSNNN

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.2

62.1

44.8

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

54.3

0.1

1.1

57.6

42.3

Minor 5ss

42.4

-0.8

2.9

58.4

45.9

Minor BPS

75.8

0.89

1.5

91.23

32.5

Associated Gene:

Gene:

PHLPP1

Ensembl Gene ID:

ENSAPLG00000003386

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028723

74395657 - 74462482

66826

ENSAPLT00000017683

74400331 - 74462482

62152

ENSAPLT00000003480

74400331 - 74459950

59620