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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74442447_74442594_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
74442447 - 74442594
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCTAAACCC
5'SS Class:
major
3'SS Sequence:
TTTAAAAAAAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTTTCCTAAAGT
Flanking Amino Acid:
THLNLKQNFLSNFSWGGMDR
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
61.4
41.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
45.1
-0.2
1.7
45.7
43.8
Minor 5ss
18.6
-3.6
3.5
26.4
36.1
Minor BPS
64.4
0.53
2
83.33
44.1

Associated Gene:

Gene:
PHLPP1
Ensembl Gene ID:
ENSAPLG00000003386
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028723
74395657 - 74462482
66826
ENSAPLT00000017683
74400331 - 74462482
62152
ENSAPLT00000003480
74400331 - 74459950
59620