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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74442714_74456180_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74442714 - 74456180
Intron Length:
13467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGCCTCTTGACT
Flanking Amino Acid:
YLRWLRQASKVASQRISSVD
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
79.7
0.67
0.9
70.1
40.4
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
67.4
0.63
1.3
77.07
39.4

Associated Gene:

Gene:
PHLPP1
Ensembl Gene ID:
ENSAPLG00000003386
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028723
74395657 - 74462482
66826
ENSAPLT00000017683
74400331 - 74462482
62152
ENSAPLT00000003480
74400331 - 74459950
59620