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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74456307_74458613_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74456307 - 74458613
Intron Length:
2307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTGCTAACA
Flanking Amino Acid:
MHVLPLIGGKVEEVKKHQHC
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.8
0.56
0.9
69.7
35.3
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
56.8
0.21
2.3
79.54
36.7

Associated Gene:

Gene:
PHLPP1
Ensembl Gene ID:
ENSAPLG00000003386
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028723
74395657 - 74462482
66826
ENSAPLT00000017683
74400331 - 74462482
62152
ENSAPLT00000003480
74400331 - 74459950
59620