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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74571778_74573648_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74571778 - 74573648
Intron Length:
1871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTAAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTCACTTAAAT
Flanking Amino Acid:
RRHADLEPIIRQLFSNTSQA
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
72.7
0.51
1
67.7
41.8
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
71.1
0.74
1.6
88.49
35.3

Associated Gene:

Gene:
ZCCHC2
Ensembl Gene ID:
ENSAPLG00000003573
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035001
74555048 - 74594588
39541
ENSAPLT00000003677
74555048 - 74594588
39541