About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74627378_74631170_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74627378 - 74631170
Intron Length:
3793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GCTCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTCTTTTCTC
Flanking Amino Acid:
SSTSDLPPASGNVTGNSNST
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70.9
0.47
0.8
61.5
34.9
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
42.5
-0.6
3.5
65.52
41.1

Associated Gene:

Gene:
TNFRSF11A
Ensembl Gene ID:
ENSAPLG00000026395
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045678
74624689 - 74648180
23492