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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74632015_74633605_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74632015 - 74633605
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTATGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAAAC
Flanking Amino Acid:
EVCSQIKGTKEPPRDAHVAV
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.4
0.68
0.9
77.1
36.9
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
63.3
0.4
1.7
74.1
35.7

Associated Gene:

Gene:
TNFRSF11A
Ensembl Gene ID:
ENSAPLG00000026395
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045678
74624689 - 74648180
23492