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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74636361_74636718_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74636361 - 74636718
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGGAT
U12 Branch Point Sequence:
CTCTTTGGGATT
Flanking Amino Acid:
SSTDECKAWTNCTALGMAEV
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
72.6
37.3
Major BPS
56.3
0.16
1.6
57.1
49.4
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
37.2
-1.4
2.9
46.5
35.3
Minor BPS
42.1
-0.5
2
57.68
40.5

Associated Gene:

Gene:
TNFRSF11A
Ensembl Gene ID:
ENSAPLG00000026395
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045678
74624689 - 74648180
23492