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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74638673_74639127_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74638673 - 74639127
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
TTGCGGGTGACC
Flanking Amino Acid:
FGRCCTKCEPGKYMSAKCTA
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.5
39.1
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
77.7
0.62
0.8
72.2
32.4
Minor 5ss
31
-2.2
3.3
39.7
46.3
Minor BPS
38
-0.9
2.7
54.6
44.1

Associated Gene:

Gene:
TNFRSF11A
Ensembl Gene ID:
ENSAPLG00000026395
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045678
74624689 - 74648180
23492