Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74639210_74648120_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

74639210 - 74648120

Intron Length:

8911

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTCAT

U12 Branch Point Sequence:

TGGGTCTCATGT

Flanking Amino Acid:

LCLAAAGQQQLSLQSTLLCD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

77.2

0.67

1.2

79.6

35.6

Major PPT

93.2

0.97

0.6

89.1

19.8

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

41.6

-0.5

55.91

46.4

Associated Gene:

Gene:

TNFRSF11A

Ensembl Gene ID:

ENSAPLG00000026395

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045678

74624689 - 74648180

23492