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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74655497_74656788_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74655497 - 74656788
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TCTTCTGTAACT
Flanking Amino Acid:
VENKTVQEPQGSMSIAASLV
Intron Amino Acid Position:
1042

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
79.4
0.66
0.8
73.3
37.1
Minor 5ss
36.2
-1.6
3.5
48.3
47.3
Minor BPS
68.6
0.66
2
87.23
39

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040660
74655376 - 74703638
48263
ENSAPLT00000035660
74655376 - 74703638
48263
ENSAPLT00000004061
74655376 - 74703638
48263