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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74656860_74659684_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74656860 - 74659684
Intron Length:
2825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTATTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCTTCCTTATTC
Flanking Amino Acid:
DMEHLSPEHEVILSSMIKEC
Intron Amino Acid Position:
1019

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.5
0.69
0.8
79
34
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
72.1
0.67
1.5
77.93
38.5

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040660
74655376 - 74703638
48263
ENSAPLT00000035660
74655376 - 74703638
48263
ENSAPLT00000004061
74655376 - 74703638
48263