About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74660551_74661254_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74660551 - 74661254
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTGCTTTTTACA
Flanking Amino Acid:
PNAEPRFRDEFVIPHLHKLA
Intron Amino Acid Position:
950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.2
35.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
88.3
0.86
0.7
83.5
31.6
Minor 5ss
43
-0.8
2.8
57.2
40.7
Minor BPS
56.5
0.2
1.6
67.8
38.6

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040660
74655376 - 74703638
48263
ENSAPLT00000035660
74655376 - 74703638
48263
ENSAPLT00000004061
74655376 - 74703638
48263