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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74661394_74663009_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
74661394 - 74663009
Intron Length:
1616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
GGGAACTTTTAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTT
Flanking Amino Acid:
TIMETVTQRELLERVKMQLA
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
53
0.07
1.2
53
45.8
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
59.3
0.37
1.7
77.93
38.7

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040660
74655376 - 74703638
48263
ENSAPLT00000035660
74655376 - 74703638
48263
ENSAPLT00000018102
74661281 - 74703638
42358
ENSAPLT00000004061
74655376 - 74703638
48263