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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74663074_74663258_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74663074 - 74663258
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TAGTTCTTAAAA
Flanking Amino Acid:
ALVTLSSDPEFSVRIATIPA
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
73.1
32
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
41.9
-0.9
3
58.5
40.5
Minor BPS
70.4
0.64
1.3
73.56
37.9

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040660
74655376 - 74703638
48263