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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74663074_74664017_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74663074 - 74664017
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TAGTTCTTAAAA
Flanking Amino Acid:
ALITLSSDPEISVRIATIPA
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
84.3
27.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
47.2
-0.3
2.8
66.2
38.1
Minor BPS
70.4
0.64
1.3
73.56
37.9

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035660
74655376 - 74703638
48263
ENSAPLT00000004061
74655376 - 74703638
48263